- Installation
- Biopython + some python packages required for visualization similar to VMD
- Bio.Seq
- Covering types of sequences
- Sequence manipulation (e.g. counting, finding codons, etc)
- Codon table and using it for protein synthesis (translate, transcribe)
- Calculating GC content
- Accessing Entrez
- Searching the database
- Retrieving data
- Seq.IO
- Parsing different bio files
- Loading data into pandas dataframe (some examples like largest chain, most common amino acids, etc)
- Comparing sequences
- Alignments
- BLAST
- Protein visualization
- Ramachandran plot
- 3D protein visualization + covering different styles and their use cases
